Pipelines Overview

Structural MRI (sMRI) Pipelines

• Freesurfer recon-all (freesurfer)
• FSL anat (fsl_anat)
• WMH Quantification (wmh_quantification)
• PVS Quantification (pvs_quantification)
• CMB Quantification (cmb_quantification)

Diffusion MRI (dMRI) Pipelines

• General DWI Processing (dwi_pipeline)
• Lesion Quantification Toolkit (LQT) Pipeline (lqt_pipeline)

Quantitative MRI (qMRI) Pipelines

• Quantitative Susceptibility Mapping (sepia_qsm)

DSC-MRI (PWI) Pipelines

• PWI Pipeline (pwi_pipeline)