Anatomical Segmentation
T1RegisterPipeline
__init__
T1w registration pipeline to register T1w images to MNI space using SynthMorph.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
subject
|
BIDSSubject
|
A BIDS subject object. |
required |
session
|
BIDSSession
|
A BIDS session object. |
required |
output_path
|
str
|
Output directory to save results. |
required |
use_which_t1w
|
str
|
Keyword to select the desired T1w image. |
None
|
template_res
|
float
|
Resolution of the MNI template to use (1mm or 0.5mm). Default is 1mm. |
1
|
A more detailed description:
Synthmorph is used for fast and robust (compared to traditional FNIRT or ANTs methods) T1w to MNI registration.